PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2468440.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 481aa    MW: 52381.8 Da    PI: 7.4281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2468440.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.2e-36682302135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa....... 70 
                       g+kdrhsk+ T++g RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++                  s   a       
  Lj4g3v2468440.3  68 SGGKDRHSKVMTSKGSRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLpetpeqqsherrgqgfddS---Adaevele 158
                      689*************************************************************8777777777777766552...02334444 PP

              TCP  71 ..sec..eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                        + +   +++++++++n+s++ + +++ +s+ s++s+ s l+l++      r kar+rarer ++++ ++++
  Lj4g3v2468440.3 159 gtE-TsfHHQQNQNQNQNQSQNLSLSKSGCSSTSETSKGSGLSLSRsdirVNRVKARERARERASKEKEKEKE 230
                      431.2335666666666666667777777777777777777777775444555*********65555544433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3969227IPR005333Transcription factor, TCP
PROSITE profilePS5136930.2370128IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.045207225IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEEDEIHGHA CKLPRLGGNG RNEPNKIGPR RGNEEEDGGG GKNGGSNTNR FSNWNHHSSR  60
IIRVSRASGG KDRHSKVMTS KGSRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKS  120
AADAIAELPS LPETPEQQSH ERRGQGFDDS ADAEVELEGT ETSFHHQQNQ NQNQNQSQNL  180
SLSKSGCSST SETSKGSGLS LSRSDIRVNR VKARERARER ASKEKEKEKE NDSHIAQHHQ  240
HHQQHNNVNP ISQTASFTEL LTGGISSAVP TTTGPVHQNN NQQWCSSSSA APMDYFTSGL  300
LGPPSSTSRT QHHHHQQHSS GFSISNIQLG HSHSLAEAMS VSLPFNGENH SSASDQMHQQ  360
FSFIPDHHLM PATAAVVTSS SASQATGNGY NLDFSISSAG LAGFNRGTLQ SNSPSFLQRF  420
SPLDGSTVPF FLGGAAATAP AMENHHHHHN LQFSPVFDGG SLQLYYGDGC RHSDQKGKAK  480
N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.17530.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1393930.0BT139393.1 Lotus japonicus clone JCVI-FLLj-3L3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518471.11e-148PREDICTED: transcription factor TCP2
RefseqXP_014518472.11e-148PREDICTED: transcription factor TCP2
RefseqXP_014518473.11e-148PREDICTED: transcription factor TCP2
TrEMBLA0A0S3S3C91e-142A0A0S3S3C9_PHAAN; Uncharacterized protein
STRINGPOPTR_0004s06440.11e-134(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2